BioSmalltalk: a pure object system and library for bioinformatics

We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinfor...

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Detalles Bibliográficos
Autores principales: Morales Durand, Hernán F., Giovambattista, Guillermo
Formato: Articulo
Lenguaje:Inglés
Publicado: 2013
Materias:
Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
Acceso en línea:http://sedici.unlp.edu.ar/handle/10915/85577
Aporte de:
SEDICI (UNLP) de Universidad Nacional de La Plata
id I19-R120-10915-85577
record_format dspace
institution Universidad Nacional de La Plata
institution_str I-19
repository_str R-120
collection SEDICI (UNLP)
language Inglés
topic Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
spellingShingle Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
Morales Durand, Hernán F.
Giovambattista, Guillermo
BioSmalltalk: a pure object system and library for bioinformatics
topic_facet Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
description We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations.
format Articulo
Articulo
author Morales Durand, Hernán F.
Giovambattista, Guillermo
author_facet Morales Durand, Hernán F.
Giovambattista, Guillermo
author_sort Morales Durand, Hernán F.
title BioSmalltalk: a pure object system and library for bioinformatics
title_short BioSmalltalk: a pure object system and library for bioinformatics
title_full BioSmalltalk: a pure object system and library for bioinformatics
title_fullStr BioSmalltalk: a pure object system and library for bioinformatics
title_full_unstemmed BioSmalltalk: a pure object system and library for bioinformatics
title_sort biosmalltalk: a pure object system and library for bioinformatics
publishDate 2013
url http://sedici.unlp.edu.ar/handle/10915/85577
work_keys_str_mv AT moralesdurandhernanf biosmalltalkapureobjectsystemandlibraryforbioinformatics
AT giovambattistaguillermo biosmalltalkapureobjectsystemandlibraryforbioinformatics
bdutipo_str Repositorios
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