GPU optimization of electroencephalogram analysis

Nowadays, with the advent of new non-invasive techniques of brain imaging, researchers have access to neural processes underlying the cognition in humans. One of the main challenges in this techniques is the detection of patterns in brain signals, generally very noisy and with artifacts inserted by...

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Autores principales: Raimondo, Federico, Kamienkowski, Juan E., Fernández Slezak, Diego
Formato: Objeto de conferencia
Lenguaje:Inglés
Publicado: 2011
Materias:
Acceso en línea:http://sedici.unlp.edu.ar/handle/10915/126113
https://40jaiio.sadio.org.ar/sites/default/files/T2011/HPC/693.pdf
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id I19-R120-10915-126113
record_format dspace
institution Universidad Nacional de La Plata
institution_str I-19
repository_str R-120
collection SEDICI (UNLP)
language Inglés
topic Ciencias Informáticas
Electroencephalogram analysis
GPU optimization
spellingShingle Ciencias Informáticas
Electroencephalogram analysis
GPU optimization
Raimondo, Federico
Kamienkowski, Juan E.
Fernández Slezak, Diego
GPU optimization of electroencephalogram analysis
topic_facet Ciencias Informáticas
Electroencephalogram analysis
GPU optimization
description Nowadays, with the advent of new non-invasive techniques of brain imaging, researchers have access to neural processes underlying the cognition in humans. One of the main challenges in this techniques is the detection of patterns in brain signals, generally very noisy and with artifacts inserted by vital signs. One of the most successful techniques for this is Independent Component Analysis which detects statistically independent components that are produced from different sources. These methods are very expensive in computational time, with many hours of processing for a single experiment. We analyzed this algorithm and detect two main types of operations: vector-matrix and matrix-matrix. We implemented an ad-hoc solution that executes on GPU and compared this with the original and CUBLAS versions. We obtained a 4x and 40x of performance increase of vector-matrix and matrix-matrix operations, respectively. These results are the first step towards real-time EEG processing which may produce a significant advance into BCI applications.
format Objeto de conferencia
Objeto de conferencia
author Raimondo, Federico
Kamienkowski, Juan E.
Fernández Slezak, Diego
author_facet Raimondo, Federico
Kamienkowski, Juan E.
Fernández Slezak, Diego
author_sort Raimondo, Federico
title GPU optimization of electroencephalogram analysis
title_short GPU optimization of electroencephalogram analysis
title_full GPU optimization of electroencephalogram analysis
title_fullStr GPU optimization of electroencephalogram analysis
title_full_unstemmed GPU optimization of electroencephalogram analysis
title_sort gpu optimization of electroencephalogram analysis
publishDate 2011
url http://sedici.unlp.edu.ar/handle/10915/126113
https://40jaiio.sadio.org.ar/sites/default/files/T2011/HPC/693.pdf
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AT kamienkowskijuane gpuoptimizationofelectroencephalogramanalysis
AT fernandezslezakdiego gpuoptimizationofelectroencephalogramanalysis
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