MiSolRNA : A tomato micro RNA relational database

Background: The economic importance of Solanaceae plant species is well documented and tomato has become a model for functional genomics studies. In plants, important processes are regulated by microRNAs (miRNA). Description: We describe here a data base integrating genetic map positions of miRNA-ta...

Descripción completa

Guardado en:
Detalles Bibliográficos
Autores principales: Bazzini, A. A., Asís, R., González, V., Bassi, S., Conte, M., Soria, M., Fernie, A. R., Asurmendi, S., Carrari, F.
Formato: article Artículo publishedVersion
Lenguaje:Inglés
Publicado: 2010
Materias:
LYCOPERSICON ESCULENTUM
MAGNOLIOPHYTA
SOLANACEAE
Acceso en línea:http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2010Bazzini
Aporte de:
FAUBA Digital - Facultad de Agronomía (UBA) de Universidad de Buenos Aires
id snrd:2010Bazzini
record_format dspace
spelling snrd:2010Bazzini2021-10-15T16:56:07Z Bazzini, A. A. Asís, R. González, V. Bassi, S. Conte, M. Soria, M. Fernie, A. R. Asurmendi, S. Carrari, F. 2010 Background: The economic importance of Solanaceae plant species is well documented and tomato has become a model for functional genomics studies. In plants, important processes are regulated by microRNAs (miRNA). Description: We describe here a data base integrating genetic map positions of miRNA-targeted genes, their expression profiles and their relations with quantitative fruit metabolic loci and yield associated traits. miSolRNA provides a metadata source to facilitate the construction of hypothesis aimed at defining physiological modes of action of regulatory process underlying the metabolism of the tomato fruit. Conclusions: The MiSolRNA database allows the simple extraction of metadata for the proposal of new hypothesis concerning possible roles of miRNAs in the regulation of tomato fruit metabolism. It permits i) to map miRNAs and their predicted target sites both on expressed (SGN-UNIGENES) and newly annotated sequences (BAC sequences released), ii) to co-locate any predicted miRNA-target interaction with metabolic QTL found in tomato fruits, iii) to retrieve expression data of target genes in tomato fruit along their developmental period and iv) to design further experiments for unresolved questions in complex trait biology based on the use of genetic materials that have been proven to be a useful tools for map-based cloning experiments in Solanaceae plant species. application/pdf 10.1186/1471-2229-10-240 1471-2229 http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2010Bazzini eng info:eu-repo/semantics/openAccess openAccess http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4 BMC Plant Biology Vol.10 10:240 http://www.biomedcentral.com/ LYCOPERSICON ESCULENTUM MAGNOLIOPHYTA SOLANACEAE MiSolRNA : A tomato micro RNA relational database article info:eu-repo/semantics/article info:ar-repo/semantics/artículo publishedVersion info:eu-repo/semantics/publishedVersion
institution Universidad de Buenos Aires
institution_str I-28
repository_str R-140
collection FAUBA Digital - Facultad de Agronomía (UBA)
language Inglés
orig_language_str_mv eng
topic LYCOPERSICON ESCULENTUM
MAGNOLIOPHYTA
SOLANACEAE
spellingShingle LYCOPERSICON ESCULENTUM
MAGNOLIOPHYTA
SOLANACEAE
Bazzini, A. A.
Asís, R.
González, V.
Bassi, S.
Conte, M.
Soria, M.
Fernie, A. R.
Asurmendi, S.
Carrari, F.
MiSolRNA : A tomato micro RNA relational database
topic_facet LYCOPERSICON ESCULENTUM
MAGNOLIOPHYTA
SOLANACEAE
description Background: The economic importance of Solanaceae plant species is well documented and tomato has become a model for functional genomics studies. In plants, important processes are regulated by microRNAs (miRNA). Description: We describe here a data base integrating genetic map positions of miRNA-targeted genes, their expression profiles and their relations with quantitative fruit metabolic loci and yield associated traits. miSolRNA provides a metadata source to facilitate the construction of hypothesis aimed at defining physiological modes of action of regulatory process underlying the metabolism of the tomato fruit. Conclusions: The MiSolRNA database allows the simple extraction of metadata for the proposal of new hypothesis concerning possible roles of miRNAs in the regulation of tomato fruit metabolism. It permits i) to map miRNAs and their predicted target sites both on expressed (SGN-UNIGENES) and newly annotated sequences (BAC sequences released), ii) to co-locate any predicted miRNA-target interaction with metabolic QTL found in tomato fruits, iii) to retrieve expression data of target genes in tomato fruit along their developmental period and iv) to design further experiments for unresolved questions in complex trait biology based on the use of genetic materials that have been proven to be a useful tools for map-based cloning experiments in Solanaceae plant species.
format article
Artículo
Artículo
publishedVersion
publishedVersion
author Bazzini, A. A.
Asís, R.
González, V.
Bassi, S.
Conte, M.
Soria, M.
Fernie, A. R.
Asurmendi, S.
Carrari, F.
author_facet Bazzini, A. A.
Asís, R.
González, V.
Bassi, S.
Conte, M.
Soria, M.
Fernie, A. R.
Asurmendi, S.
Carrari, F.
author_sort Bazzini, A. A.
title MiSolRNA : A tomato micro RNA relational database
title_short MiSolRNA : A tomato micro RNA relational database
title_full MiSolRNA : A tomato micro RNA relational database
title_fullStr MiSolRNA : A tomato micro RNA relational database
title_full_unstemmed MiSolRNA : A tomato micro RNA relational database
title_sort misolrna : a tomato micro rna relational database
publishDate 2010
url http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2010Bazzini
work_keys_str_mv AT bazziniaa misolrnaatomatomicrornarelationaldatabase
AT asisr misolrnaatomatomicrornarelationaldatabase
AT gonzalezv misolrnaatomatomicrornarelationaldatabase
AT bassis misolrnaatomatomicrornarelationaldatabase
AT contem misolrnaatomatomicrornarelationaldatabase
AT soriam misolrnaatomatomicrornarelationaldatabase
AT ferniear misolrnaatomatomicrornarelationaldatabase
AT asurmendis misolrnaatomatomicrornarelationaldatabase
AT carrarif misolrnaatomatomicrornarelationaldatabase
_version_ 1790354989832470528

Ejemplares similares