Genetic and biochemical studies in Argentinean patients with variegate porphyria
Background: A partial deficiency in Protoporphyrinogen oxidase (PPOX) produces the mixed disorder Variegate Porphyria (VP), the second acute porphyria more frequent in Argentina. Identification of patients with an overt VP is absolutely important because treatment depends on an accurate diagnosis bu...
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| Autores principales: | , , , , |
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| Publicado: |
2008
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| Acceso en línea: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_14712350_v9_n_p_Rossetti http://hdl.handle.net/20.500.12110/paper_14712350_v9_n_p_Rossetti |
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paper:paper_14712350_v9_n_p_Rossetti |
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dspace |
| institution |
Universidad de Buenos Aires |
| institution_str |
I-28 |
| repository_str |
R-134 |
| collection |
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
| topic |
adenine alanine amino acid complementary DNA cytosine glutamic acid glycine guanine nucleic acid protoporphyrinogen oxidase RNA threonine thymine tryptophan valine flavoprotein heme mitochondrial protein PPOX protein, human protoporphyrinogen oxidase adolescent adult amino acid substitution Argentina article binding site chemical analysis child codon controlled study DNA flanking region DNA sequence exon family study female frameshift mutation gene amplification gene deletion gene insertion genetic analysis genetic code heterozygosity human intron major clinical study male missense mutation molecular biology mutational analysis nucleic acid base substitution nucleotide sequence porphyria variegata promoter region reverse transcription polymerase chain reaction RNA sequence RNA transcription signal transduction biosynthesis genetics heterozygote detection metabolism middle aged polymerase chain reaction porphyria variegata Adolescent Adult Exons Female Flavoproteins Frameshift Mutation Heme Heterozygote Detection Humans Male Middle Aged Mitochondrial Proteins Mutation, Missense Polymerase Chain Reaction Porphyria, Variegate Protoporphyrinogen Oxidase Sequence Analysis, DNA |
| spellingShingle |
adenine alanine amino acid complementary DNA cytosine glutamic acid glycine guanine nucleic acid protoporphyrinogen oxidase RNA threonine thymine tryptophan valine flavoprotein heme mitochondrial protein PPOX protein, human protoporphyrinogen oxidase adolescent adult amino acid substitution Argentina article binding site chemical analysis child codon controlled study DNA flanking region DNA sequence exon family study female frameshift mutation gene amplification gene deletion gene insertion genetic analysis genetic code heterozygosity human intron major clinical study male missense mutation molecular biology mutational analysis nucleic acid base substitution nucleotide sequence porphyria variegata promoter region reverse transcription polymerase chain reaction RNA sequence RNA transcription signal transduction biosynthesis genetics heterozygote detection metabolism middle aged polymerase chain reaction porphyria variegata Adolescent Adult Exons Female Flavoproteins Frameshift Mutation Heme Heterozygote Detection Humans Male Middle Aged Mitochondrial Proteins Mutation, Missense Polymerase Chain Reaction Porphyria, Variegate Protoporphyrinogen Oxidase Sequence Analysis, DNA Rossetti, María Victoria Granata, Bárbara Xoana Giudice, Jimena Parera, Victoria Estela Batlle, Alcira María del Carmen Genetic and biochemical studies in Argentinean patients with variegate porphyria |
| topic_facet |
adenine alanine amino acid complementary DNA cytosine glutamic acid glycine guanine nucleic acid protoporphyrinogen oxidase RNA threonine thymine tryptophan valine flavoprotein heme mitochondrial protein PPOX protein, human protoporphyrinogen oxidase adolescent adult amino acid substitution Argentina article binding site chemical analysis child codon controlled study DNA flanking region DNA sequence exon family study female frameshift mutation gene amplification gene deletion gene insertion genetic analysis genetic code heterozygosity human intron major clinical study male missense mutation molecular biology mutational analysis nucleic acid base substitution nucleotide sequence porphyria variegata promoter region reverse transcription polymerase chain reaction RNA sequence RNA transcription signal transduction biosynthesis genetics heterozygote detection metabolism middle aged polymerase chain reaction porphyria variegata Adolescent Adult Exons Female Flavoproteins Frameshift Mutation Heme Heterozygote Detection Humans Male Middle Aged Mitochondrial Proteins Mutation, Missense Polymerase Chain Reaction Porphyria, Variegate Protoporphyrinogen Oxidase Sequence Analysis, DNA |
| description |
Background: A partial deficiency in Protoporphyrinogen oxidase (PPOX) produces the mixed disorder Variegate Porphyria (VP), the second acute porphyria more frequent in Argentina. Identification of patients with an overt VP is absolutely important because treatment depends on an accurate diagnosis but more critical is the identification of asymptomatic relatives to avoid acute attacks which may progress to death. Methods: We have studied at molecular level 18 new Argentinean patients biochemically diagnosed as VP. PPOX gene was amplified in one or in twelve PCR reactions. All coding exons, flanking intronic and promoter regions were manual or automatically sequenced. For RT-PCR studies RNA was retrotranscripted, amplified and sequenced. PPOX activity in those families carrying a new and uncharacterized mutation was performed. Results: All affected individuals harboured mutations in heterozygous state. Nine novel mutations and 3 already reported mutations were identified. Six of the novel mutations were single nucleotide substitutions, 2 were small deletions and one a small insertion. Three single nucleotide substitutions and the insertion were at exon-intron boundaries. Two of the single nucleotide substitutions, c.471G>A and c.807G>A and the insertion (c.388+3insT) were close to the splice donor sites in exons 5, 7 and intron 4 respectively. The other single nucleotide substitution was a transversion in the last base of intron 7, g.3912G>C (c.808-1G>C) so altering the consensus acceptor splice site. However, only in the first case the abnormal band showing the skipping of exon 5 was detected. The other single nucleotide substitutions were transversions: c.101A>T, c.995G>C and c.670 T>G that result in p.E34V, p.G332A and W224G aminoacid substitutions in exons 3, 10 and 7 respectively. Activity measurements indicate that these mutations reduced about 50% PPOX activity and also that they co-segregate with this reduced activity value. Two frameshift mutations, c.133delT and c.925delA, were detected in exons 3 and 9 respectively. The first leads to an early termination signal 22 codons downstream (p.S45fsX67) and the second leads to a stop codon 5 codons downstream (p.I309fsX314). One reported mutation was a missense mutation (p.G232R) and 2 were frameshift mutations: c.1082insC and 1043insT. The last mutation was detected in six new apparently unrelated Argentinean families. Conclusion: Molecular analysis in available family members revealed 14 individuals who were silent carriers of VP. Molecular techniques represent the most accurate approach to identify unaffected carriers and to provide accurate genetic counselling for asymptomatic individuals. The initial screening includes the insertion search. © 2008 Rossetti et al; licensee BioMed Central Ltd. |
| author |
Rossetti, María Victoria Granata, Bárbara Xoana Giudice, Jimena Parera, Victoria Estela Batlle, Alcira María del Carmen |
| author_facet |
Rossetti, María Victoria Granata, Bárbara Xoana Giudice, Jimena Parera, Victoria Estela Batlle, Alcira María del Carmen |
| author_sort |
Rossetti, María Victoria |
| title |
Genetic and biochemical studies in Argentinean patients with variegate porphyria |
| title_short |
Genetic and biochemical studies in Argentinean patients with variegate porphyria |
| title_full |
Genetic and biochemical studies in Argentinean patients with variegate porphyria |
| title_fullStr |
Genetic and biochemical studies in Argentinean patients with variegate porphyria |
| title_full_unstemmed |
Genetic and biochemical studies in Argentinean patients with variegate porphyria |
| title_sort |
genetic and biochemical studies in argentinean patients with variegate porphyria |
| publishDate |
2008 |
| url |
https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_14712350_v9_n_p_Rossetti http://hdl.handle.net/20.500.12110/paper_14712350_v9_n_p_Rossetti |
| work_keys_str_mv |
AT rossettimariavictoria geneticandbiochemicalstudiesinargentineanpatientswithvariegateporphyria AT granatabarbaraxoana geneticandbiochemicalstudiesinargentineanpatientswithvariegateporphyria AT giudicejimena geneticandbiochemicalstudiesinargentineanpatientswithvariegateporphyria AT pareravictoriaestela geneticandbiochemicalstudiesinargentineanpatientswithvariegateporphyria AT batllealciramariadelcarmen geneticandbiochemicalstudiesinargentineanpatientswithvariegateporphyria |
| _version_ |
1768545160157724672 |
| spelling |
paper:paper_14712350_v9_n_p_Rossetti2023-06-08T16:17:19Z Genetic and biochemical studies in Argentinean patients with variegate porphyria Rossetti, María Victoria Granata, Bárbara Xoana Giudice, Jimena Parera, Victoria Estela Batlle, Alcira María del Carmen adenine alanine amino acid complementary DNA cytosine glutamic acid glycine guanine nucleic acid protoporphyrinogen oxidase RNA threonine thymine tryptophan valine flavoprotein heme mitochondrial protein PPOX protein, human protoporphyrinogen oxidase adolescent adult amino acid substitution Argentina article binding site chemical analysis child codon controlled study DNA flanking region DNA sequence exon family study female frameshift mutation gene amplification gene deletion gene insertion genetic analysis genetic code heterozygosity human intron major clinical study male missense mutation molecular biology mutational analysis nucleic acid base substitution nucleotide sequence porphyria variegata promoter region reverse transcription polymerase chain reaction RNA sequence RNA transcription signal transduction biosynthesis genetics heterozygote detection metabolism middle aged polymerase chain reaction porphyria variegata Adolescent Adult Exons Female Flavoproteins Frameshift Mutation Heme Heterozygote Detection Humans Male Middle Aged Mitochondrial Proteins Mutation, Missense Polymerase Chain Reaction Porphyria, Variegate Protoporphyrinogen Oxidase Sequence Analysis, DNA Background: A partial deficiency in Protoporphyrinogen oxidase (PPOX) produces the mixed disorder Variegate Porphyria (VP), the second acute porphyria more frequent in Argentina. Identification of patients with an overt VP is absolutely important because treatment depends on an accurate diagnosis but more critical is the identification of asymptomatic relatives to avoid acute attacks which may progress to death. Methods: We have studied at molecular level 18 new Argentinean patients biochemically diagnosed as VP. PPOX gene was amplified in one or in twelve PCR reactions. All coding exons, flanking intronic and promoter regions were manual or automatically sequenced. For RT-PCR studies RNA was retrotranscripted, amplified and sequenced. PPOX activity in those families carrying a new and uncharacterized mutation was performed. Results: All affected individuals harboured mutations in heterozygous state. Nine novel mutations and 3 already reported mutations were identified. Six of the novel mutations were single nucleotide substitutions, 2 were small deletions and one a small insertion. Three single nucleotide substitutions and the insertion were at exon-intron boundaries. Two of the single nucleotide substitutions, c.471G>A and c.807G>A and the insertion (c.388+3insT) were close to the splice donor sites in exons 5, 7 and intron 4 respectively. The other single nucleotide substitution was a transversion in the last base of intron 7, g.3912G>C (c.808-1G>C) so altering the consensus acceptor splice site. However, only in the first case the abnormal band showing the skipping of exon 5 was detected. The other single nucleotide substitutions were transversions: c.101A>T, c.995G>C and c.670 T>G that result in p.E34V, p.G332A and W224G aminoacid substitutions in exons 3, 10 and 7 respectively. Activity measurements indicate that these mutations reduced about 50% PPOX activity and also that they co-segregate with this reduced activity value. Two frameshift mutations, c.133delT and c.925delA, were detected in exons 3 and 9 respectively. The first leads to an early termination signal 22 codons downstream (p.S45fsX67) and the second leads to a stop codon 5 codons downstream (p.I309fsX314). One reported mutation was a missense mutation (p.G232R) and 2 were frameshift mutations: c.1082insC and 1043insT. The last mutation was detected in six new apparently unrelated Argentinean families. Conclusion: Molecular analysis in available family members revealed 14 individuals who were silent carriers of VP. Molecular techniques represent the most accurate approach to identify unaffected carriers and to provide accurate genetic counselling for asymptomatic individuals. The initial screening includes the insertion search. © 2008 Rossetti et al; licensee BioMed Central Ltd. Fil:Rossetti, M.V. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Granata, B.X. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Giudice, J. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Parera, V.E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Batlle, A. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. 2008 https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_14712350_v9_n_p_Rossetti http://hdl.handle.net/20.500.12110/paper_14712350_v9_n_p_Rossetti |