RepeatsDB: A database of tandem repeat protein structures
RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein structures, as the underlying sequence can be highly degenerate. Several repeat types haven been studied over the years, but the...
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2014
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| Acceso en línea: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_03051048_v42_nD1_pD352_DiDomenico http://hdl.handle.net/20.500.12110/paper_03051048_v42_nD1_pD352_DiDomenico |
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paper:paper_03051048_v42_nD1_pD352_DiDomenico2023-06-08T15:30:31Z RepeatsDB: A database of tandem repeat protein structures article information processing information retrieval priority journal protein database protein secondary structure protein structure structure analysis tandem repeat web browser amino acid sequence Internet molecular genetics protein conformation access to information amino acid sequence Article data analysis Databases, Protein Internet Molecular Sequence Annotation Protein Conformation Repetitive Sequences, Amino Acid RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein structures, as the underlying sequence can be highly degenerate. Several repeat types haven been studied over the years, but their annotation was done in a case-by-case basis, thus making large-scale analysis difficult. We developed RepeatsDB to fill this gap. Using state-of-the-art repeat detection methods and manual curation, we systematically annotated the Protein Data Bank, predicting 10 745 repeat structures. In all, 2797 structures were classified according to a recently proposed classification schema, which was expanded to accommodate new findings. In addition, detailed annotations were performed in a subset of 321 proteins. These annotations feature information on start and end positions for the repeat regions and units. RepeatsDB is an ongoing effort to systematically classify and annotate structural protein repeats in a consistent way. It provides users with the possibility to access and download high-quality datasets either interactively or programmatically through web services. © 2013 The Author(s). Published by Oxford University Press. 2014 https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_03051048_v42_nD1_pD352_DiDomenico http://hdl.handle.net/20.500.12110/paper_03051048_v42_nD1_pD352_DiDomenico |
| institution |
Universidad de Buenos Aires |
| institution_str |
I-28 |
| repository_str |
R-134 |
| collection |
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
| topic |
article information processing information retrieval priority journal protein database protein secondary structure protein structure structure analysis tandem repeat web browser amino acid sequence Internet molecular genetics protein conformation access to information amino acid sequence Article data analysis Databases, Protein Internet Molecular Sequence Annotation Protein Conformation Repetitive Sequences, Amino Acid |
| spellingShingle |
article information processing information retrieval priority journal protein database protein secondary structure protein structure structure analysis tandem repeat web browser amino acid sequence Internet molecular genetics protein conformation access to information amino acid sequence Article data analysis Databases, Protein Internet Molecular Sequence Annotation Protein Conformation Repetitive Sequences, Amino Acid RepeatsDB: A database of tandem repeat protein structures |
| topic_facet |
article information processing information retrieval priority journal protein database protein secondary structure protein structure structure analysis tandem repeat web browser amino acid sequence Internet molecular genetics protein conformation access to information amino acid sequence Article data analysis Databases, Protein Internet Molecular Sequence Annotation Protein Conformation Repetitive Sequences, Amino Acid |
| description |
RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein structures, as the underlying sequence can be highly degenerate. Several repeat types haven been studied over the years, but their annotation was done in a case-by-case basis, thus making large-scale analysis difficult. We developed RepeatsDB to fill this gap. Using state-of-the-art repeat detection methods and manual curation, we systematically annotated the Protein Data Bank, predicting 10 745 repeat structures. In all, 2797 structures were classified according to a recently proposed classification schema, which was expanded to accommodate new findings. In addition, detailed annotations were performed in a subset of 321 proteins. These annotations feature information on start and end positions for the repeat regions and units. RepeatsDB is an ongoing effort to systematically classify and annotate structural protein repeats in a consistent way. It provides users with the possibility to access and download high-quality datasets either interactively or programmatically through web services. © 2013 The Author(s). Published by Oxford University Press. |
| title |
RepeatsDB: A database of tandem repeat protein structures |
| title_short |
RepeatsDB: A database of tandem repeat protein structures |
| title_full |
RepeatsDB: A database of tandem repeat protein structures |
| title_fullStr |
RepeatsDB: A database of tandem repeat protein structures |
| title_full_unstemmed |
RepeatsDB: A database of tandem repeat protein structures |
| title_sort |
repeatsdb: a database of tandem repeat protein structures |
| publishDate |
2014 |
| url |
https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_03051048_v42_nD1_pD352_DiDomenico http://hdl.handle.net/20.500.12110/paper_03051048_v42_nD1_pD352_DiDomenico |
| _version_ |
1768544641078001664 |