Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose
The adiabatic potential energy surfaces (PES) of two trisaccharides (β-cellotriose and α-maltotriose) were obtained using the MM3 force field. Each PES can be described by a single 3D contour map for which the energy is plotted against the two ψ glycosidic angles. Given the usually small variations...
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2003
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| Acceso en línea: | https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00086215_v338_n1_p95_Stortz http://hdl.handle.net/20.500.12110/paper_00086215_v338_n1_p95_Stortz |
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paper:paper_00086215_v338_n1_p95_Stortz2023-06-08T14:32:44Z Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose Conformational analysis MM3 Molecular mechanics Potential energy surfaces Ramachandran map Trisaccharides Contour measurement Potential energy Single crystals Surfaces X ray analysis Glycosidic angles Carbohydrates carbohydrate derivative cellotriose disaccharide glycoside maltotriose monosaccharide trisaccharide unclassified drug article conformation energy molecular dynamics priority journal X ray crystallography Carbohydrate Conformation Cellulose Models, Molecular Thermodynamics Trisaccharides The adiabatic potential energy surfaces (PES) of two trisaccharides (β-cellotriose and α-maltotriose) were obtained using the MM3 force field. Each PES can be described by a single 3D contour map for which the energy is plotted against the two ψ glycosidic angles. Given the usually small variations of the φ glycosidic torsional angle in the low-energy regions of disaccharide maps (at least with MM3), it is valid to leave both φ glycosidic angles to relax in the process of building the conformational map of trisaccharides. The surfaces are those expected from the map of disaccharides containing the same linkages and monosaccharide units (i.e., β-cellobiose and α-maltose), with second-order factors altering the 'symmetry' of both linkages. A large low-energy region appears for β-cellotriose, comprising four minima in close proximity, with barriers between them below 0.6 kcal/mol. On the other hand, for α-maltotriose a main global minimum is observed, with several surrounding local minima. The surfaces obtained agree with single-crystal X-ray data on these trisaccharides and derivatives. A reduction of the linkage flexibilities is observed when passing from the disaccharides to the trisaccharides. Furthermore, the linkage closer to the reducing end appears to be less flexible than the linkage closer to the non-reducing end. © 2002 Elsevier Science Ltd. All rights reserved. 2003 https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00086215_v338_n1_p95_Stortz http://hdl.handle.net/20.500.12110/paper_00086215_v338_n1_p95_Stortz |
| institution |
Universidad de Buenos Aires |
| institution_str |
I-28 |
| repository_str |
R-134 |
| collection |
Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
| topic |
Conformational analysis MM3 Molecular mechanics Potential energy surfaces Ramachandran map Trisaccharides Contour measurement Potential energy Single crystals Surfaces X ray analysis Glycosidic angles Carbohydrates carbohydrate derivative cellotriose disaccharide glycoside maltotriose monosaccharide trisaccharide unclassified drug article conformation energy molecular dynamics priority journal X ray crystallography Carbohydrate Conformation Cellulose Models, Molecular Thermodynamics Trisaccharides |
| spellingShingle |
Conformational analysis MM3 Molecular mechanics Potential energy surfaces Ramachandran map Trisaccharides Contour measurement Potential energy Single crystals Surfaces X ray analysis Glycosidic angles Carbohydrates carbohydrate derivative cellotriose disaccharide glycoside maltotriose monosaccharide trisaccharide unclassified drug article conformation energy molecular dynamics priority journal X ray crystallography Carbohydrate Conformation Cellulose Models, Molecular Thermodynamics Trisaccharides Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose |
| topic_facet |
Conformational analysis MM3 Molecular mechanics Potential energy surfaces Ramachandran map Trisaccharides Contour measurement Potential energy Single crystals Surfaces X ray analysis Glycosidic angles Carbohydrates carbohydrate derivative cellotriose disaccharide glycoside maltotriose monosaccharide trisaccharide unclassified drug article conformation energy molecular dynamics priority journal X ray crystallography Carbohydrate Conformation Cellulose Models, Molecular Thermodynamics Trisaccharides |
| description |
The adiabatic potential energy surfaces (PES) of two trisaccharides (β-cellotriose and α-maltotriose) were obtained using the MM3 force field. Each PES can be described by a single 3D contour map for which the energy is plotted against the two ψ glycosidic angles. Given the usually small variations of the φ glycosidic torsional angle in the low-energy regions of disaccharide maps (at least with MM3), it is valid to leave both φ glycosidic angles to relax in the process of building the conformational map of trisaccharides. The surfaces are those expected from the map of disaccharides containing the same linkages and monosaccharide units (i.e., β-cellobiose and α-maltose), with second-order factors altering the 'symmetry' of both linkages. A large low-energy region appears for β-cellotriose, comprising four minima in close proximity, with barriers between them below 0.6 kcal/mol. On the other hand, for α-maltotriose a main global minimum is observed, with several surrounding local minima. The surfaces obtained agree with single-crystal X-ray data on these trisaccharides and derivatives. A reduction of the linkage flexibilities is observed when passing from the disaccharides to the trisaccharides. Furthermore, the linkage closer to the reducing end appears to be less flexible than the linkage closer to the non-reducing end. © 2002 Elsevier Science Ltd. All rights reserved. |
| title |
Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose |
| title_short |
Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose |
| title_full |
Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose |
| title_fullStr |
Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose |
| title_full_unstemmed |
Depicting the MM3 potential energy surfaces of trisaccharides by single contour maps: Application to β-cellotriose and α-maltotriose |
| title_sort |
depicting the mm3 potential energy surfaces of trisaccharides by single contour maps: application to β-cellotriose and α-maltotriose |
| publishDate |
2003 |
| url |
https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00086215_v338_n1_p95_Stortz http://hdl.handle.net/20.500.12110/paper_00086215_v338_n1_p95_Stortz |
| _version_ |
1768543494646792192 |