Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)

SUMMARY: We present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional scaling algorithm. Our tool is aimed at determining the ancestry of unknown sam...

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Detalles Bibliográficos
Autores principales: Malaspinas, Anna Sapfo, Tange, Ole, Moreno Mayar, José Víctor, Rasmussen, Morten, DeGiorgio, Michael, Wang, Yong, Valdiosera, Cristina E., Politis, Gustavo Gabriel, Willerslev, Eske, Nielsen, Rasmus
Formato: Artículo publishedVersion
Lenguaje:Inglés
Publicado: Oxford University Press 2014
Materias:
ANCESTROS
GENETIC
DNA
https://purl.org/becyt/ford/6.1
https://purl.org/becyt/ford/6
Acceso en línea:http://hdl.handle.net/11336/136694
http://suquia.ffyh.unc.edu.ar/handle/11336/136694
Aporte de:
Suquía - Instituto de Antropología de Córdoba (IDACOR, CONICET y UNC) de Universidad Nacional de Córdoba
id I10-R181-11336-136694
record_format dspace
institution Universidad Nacional de Córdoba
institution_str I-10
repository_str R-181
collection Suquía - Instituto de Antropología de Córdoba (IDACOR, CONICET y UNC)
language Inglés
topic ANCESTROS
GENETIC
DNA
https://purl.org/becyt/ford/6.1
https://purl.org/becyt/ford/6
spellingShingle ANCESTROS
GENETIC
DNA
https://purl.org/becyt/ford/6.1
https://purl.org/becyt/ford/6
Malaspinas, Anna Sapfo
Tange, Ole
Moreno Mayar, José Víctor
Rasmussen, Morten
DeGiorgio, Michael
Wang, Yong
Valdiosera, Cristina E.
Politis, Gustavo Gabriel
Willerslev, Eske
Nielsen, Rasmus
Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
topic_facet ANCESTROS
GENETIC
DNA
https://purl.org/becyt/ford/6.1
https://purl.org/becyt/ford/6
description SUMMARY: We present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional scaling algorithm. Our tool is aimed at determining the ancestry of unknown samples-typical of ancient DNA data-particularly when only low amounts of data are available for those samples.
format Artículo
Artículo
publishedVersion
author Malaspinas, Anna Sapfo
Tange, Ole
Moreno Mayar, José Víctor
Rasmussen, Morten
DeGiorgio, Michael
Wang, Yong
Valdiosera, Cristina E.
Politis, Gustavo Gabriel
Willerslev, Eske
Nielsen, Rasmus
author_facet Malaspinas, Anna Sapfo
Tange, Ole
Moreno Mayar, José Víctor
Rasmussen, Morten
DeGiorgio, Michael
Wang, Yong
Valdiosera, Cristina E.
Politis, Gustavo Gabriel
Willerslev, Eske
Nielsen, Rasmus
author_sort Malaspinas, Anna Sapfo
title Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
title_short Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
title_full Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
title_fullStr Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
title_full_unstemmed Bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
title_sort bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (mds)
publisher Oxford University Press
publishDate 2014
url http://hdl.handle.net/11336/136694
http://suquia.ffyh.unc.edu.ar/handle/11336/136694
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