Pseudomonas extremaustralis sp. nov., a poly(3-hydroxybutyrate) producer isolated from an antarctic environment

A Gram-negative, mobile, rod-shaped, non-spore-forming bacterium (strain 14-3T) was isolated from a temporary pond in Antarctica. On the basis of 16S rRNA gene sequence similarity, strain 14-3T was shown to belong to the genus Pseudomonas sensu stricto. Physiological and biochemical tests supported...

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Autor principal: López, N.I
Otros Autores: Pettinari, M.J, Stackebrandt, E., Tribelli, P.M, Põtter, M., Steinbüchel, A., Méndez, B.S
Formato: Capítulo de libro
Lenguaje:Inglés
Publicado: 2009
Acceso en línea:Registro en Scopus
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Sumario:A Gram-negative, mobile, rod-shaped, non-spore-forming bacterium (strain 14-3T) was isolated from a temporary pond in Antarctica. On the basis of 16S rRNA gene sequence similarity, strain 14-3T was shown to belong to the genus Pseudomonas sensu stricto. Physiological and biochemical tests supported the phylogenetic affiliation. Strain 14-3T is closely related to Pseudomonas veronii DSM 11331T, sharing 99.7% sequence similarity. DNA-DNA hybridization experiments between the two strains showed only moderate reassociation similarity (35.1%). Tests for arginine dihydrolase and nitrate reduction were positive, while those for denitrification, indol production, glucose acidification, urease, -galactosidase, esculin, caseine and gelatin hydrolysis were negative. Growth of this bacterium occurred in a range from 4 to 37°C but not at 42°C. It accumulated poly(3-hydroxybutyrate) when grown on sodium octanoate medium. Strain 14-3T therefore represents the type strain of a new species, for which the name Pseudomonas extremaustralis sp. nov. is proposed. The type strain 14-3T has been deposited as DSM 17835T and as CIP 109839T. © 2009 Springer Science+Business Media, LLC.
Bibliografía:Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J., Gapped BLAST and PSI-BLAST: A new generation of protein database search programs (1997) Nucleic Acids Research, 25 (17), pp. 3389-3402. , DOI 10.1093/nar/25.17.3389
Anzai, Y., Kim, H., Park, J.Y., Wakabayashi, H., Oyaizu, H., Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence (2000) Int J Syst Bacteriol, 50, pp. 1563-1589
Ayub, N.D., Pettinari, M.J., Ruiz, J.A., López, N.I., A polyhydroxybutyrate-producing Pseudomonas sp. isolated from Antarctic environments with high stress resistance (2004) Curr Microbiol, 49, pp. 170-174. , 15386099 10.1007/s00284-004-4254-2
Ayub, N.D., Julia Pettinari, M., Mendez, B.S., Lopez, N.I., Impaired polyhydroxybutyrate biosynthesis from glucose in Pseudomonas sp. 14-3 is due to a defective β-ketothiolase gene (2006) FEMS Microbiology Letters, 264 (1), pp. 125-131. , DOI 10.1111/j.1574-6968.2006.00446.x
Ayub, N.D., Pettinari, M.J., Mendez, B.S., Lopez, N.I., The polyhydroxyalkanoate genes of a stress resistant Antarctic Pseudomonas are situated within a genomic island (2007) Plasmid, 58 (3), pp. 240-248. , DOI 10.1016/j.plasmid.2007.05.003, PII S0147619X07000741
Ayub, N.D., Tribelli, P.M., López, N.I., Polyhydroxyalkanoates are essential for maintenance of redox state in the Antarctic bacterium Pseudomonas sp. 14-3 during low-temperature adaptation (2009) Extremophiles, 13, pp. 59-66. , 18931822 10.1007/s00792-008-0197-z
Behrendt, U., Ulrich, A., Schumann, P., Fluorescent pseudomonads associated with the phyllosphere of grasses; Pseudomonas trivialis sp. nov., Pseudomonas poae sp. nov. and Pseudomonas congelans sp. nov (2003) International Journal of Systematic and Evolutionary Microbiology, 53 (5), pp. 1461-1469. , DOI 10.1099/ijs.0.02567-0
Bozal, N., Montes, M.J., Mercade, E., Pseudomonas guineae sp. nov., a novel psychrotolerant bacterium from an Antarctic environment (2007) International Journal of Systematic and Evolutionary Microbiology, 57 (11), pp. 2609-2612. , DOI 10.1099/ijs.0.65141-0
Braunegg, G., Sonnleitner, B., Lafferty, R.M., A rapid gas chromatographic method for the determination of poly - Hydroxybutyric acid in microbial biomass (1978) Eur J Appl Microbiol Biotechnol, 6, pp. 29-37. , 10.1007/BF00500854
Bruni, V., Gugliandolo, C., Maugeri, T., Allegra, A., Psychrotrophic bacteria from a coastal station in the Ross Sea (Terra Nova Bay, Antarctica) (1999) New Microbiol, 22, pp. 357-363. , 10555207
Cashion, P., Holder Franklin, M.A., McCully, J., Franklin, M., A rapid method for the base ratio determination of bacterial DNA (1977) Analytical Biochemistry, 81 (2), pp. 461-466. , DOI 10.1016/0003-2697(77)90720-5
De Ley, J., Cattoir, H., Reynaerts, A., The quantitative measurement of DNA hybridization from renaturation rates (1970) Eur J Biochem, 12, pp. 133-142. , 4984993 10.1111/j.1432-1033.1970.tb00830.x
De Smet, M.J., Eggink, G., Witholt, B., Kingma, J., Wynberg, H., Characterization of intracellular inclusions formed by Pseudomonas oleovorans during growth on octane (1983) J Bacteriol, 154, pp. 870-878. , 6841319
Diard, S., Carlier, J.P., Ageron, E., Grimont, P.A.D., Langlois, V., Guerin, P., Bouvet, O.M.M., Accumulation of Poly(3-hydroxybutyrate) from octanoate in different Pseudomonas belonging to the rRNA homology group i (2002) Syst Appl Microbiol, 25, pp. 183-188. , 12353870 10.1078/0723-2020-00114
Elomari, M., Coroler, L., Hoste, B., Gillis, M., Izard, D., Leclerc, H., DNA relatedness among Pseudomonas strains isolated from natural mineral waters and proposal of Pseudomonas veronii sp. nov. (1996) Int J Syst Bacteriol, 46, pp. 1138-1144. , 8863448
Escara, J.F., Hutton, J.R., Thermal stability and renaturation of DNA in dimethyl sulfoxide solutions: Acceleration of the renaturation rate (1980) Biopolymers, 19, pp. 1315-1327. , 7397315 10.1002/bip.1980.360190708
Huss, V.A.R., Festl, H., Schleifer, K.H., Studies on the spectrophotometric determination of DNA hybridization from renaturation rates (1983) Syst Appl Microbiol, 4, pp. 184-192
Ivanova, E.P., Gorshkova, N.M., Sawabe, T., Hayashi, K., Kalinovskaya, N.I., Lysenko, A.M., Zhukova, N.V., Christen, R., Pseudomonas extremorientalis sp. nov., isolated from a driking water reservoir (2002) International Journal of Systematic and Evolutionary Microbiology, 52 (6), pp. 2113-2120. , DOI 10.1099/ijs.0.02197-0
Kämpfer, P., Kroppenstedt, R.M., Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa (1996) Can J Microbiol, 42, pp. 989-1005
Kessler, B., Palleroni, N.J., Taxonomic implications of synthesis of poly - Hydroxybutyrate and other poly - Hydroxyalkanoates by aerobic pseudomonads (2000) Int J Syst Evol Microbiol, 50, pp. 711-713. , 10758879
King, E.O., Ward, M.K., Raney, D.E., Two simple media for the demonstration of pyocyanin and fluorescein (1954) J Lab Clin Med, 44, pp. 301-307. , 13184240
Kriss, A.E., Mitskevich, I.N., Rozanova, E.P., Osnitskaia, L.K., Microbiological studies of the Wanda Lake (Antarctica) (1976) Mikrobiologiya, 45, pp. 1075-1081
Kumar, S., Tamura, K., Nei, M., MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment (2004) Brief Bioinform, 5, pp. 150-163. , 15260895 10.1093/bib/5.2.150
Maugeri, T.L., Gugliandolo, C., Bruni, V., Heterotrophic bacteria in the Ross Sea (Terra Nova Bay, Antarctica) (1996) New Microbiol, 19, pp. 67-76. , 8673854
Moore, E.R.B., Mau, M., Arnscheidt, A., Bottger, E.C., Hutson, R.A., Collins, M.D., Van De Peer, Y., Timmis, K.N., The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships (1996) Syst Appl Microbiol, 19, pp. 478-492
Migula, W., Über ein neues System der Bakterien (1894) Arb Bakteriol Inst Karlsruhe, 1, pp. 235-238
Miller, L.T., A single derivatization method for bacterial fatty acid methyl esters including hydroxy acids (1982) J Clin Microbiol, 16, pp. 584-586. , 7130373
Ostle, A., Holt, J.G., Nile Blue A as a fluorescent stain for poly-hydroxybutyrate (1982) Appl Environ Microbiol, 44, pp. 238-241. , 6181737
Rainey, F.A., Stackebrandt, E., 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia (1993) FEMS Microbiol Lett, 113, pp. 125-128. , 7505248 10.1111/j.1574-6968.1993.tb06501.x
Reddy, G.S.N., Matsumoto, G.I., Schumann, P., Stackerbrandt, E., Shivaji, S., Psychrophilic pseudomonads from Antarctica: Pseudomonas antartica sp. nov., Pseudomonas meridiana sp. nov. and Pseudomonas proteolytica sp. nov (2004) International Journal of Systematic and Evolutionary Microbiology, 54 (3), pp. 713-719. , DOI 10.1099/ijs.0.02827-0
Saitou, N., Nei, M., The neighbor-joining method: A new method for reconstructing phylogenetic trees (1987) Mol Biol Evol, 4, pp. 406-425. , 3447015
Shivaji, S., Vijama Bhanu, N., Aggarwal, R.K., Isolation and identification of Pseudomonas spp. from Schirmacher Oasis, Antarctica (1989) Appl Environ Microbiol, 55, pp. 767-770. , 2930174
Timm, A., Steinbüchel, A., Formation of polyesters consisting of medium-chain-length 3-hydroxyalkanoic acids from gluconate by Pseudomonas aeruginosa and other fluorescent pseudomonads (1990) Appl Environ Microbiol, 56, pp. 3360-3367. , 2125185
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools (1997) Nucleic Acids Research, 25 (24), pp. 4876-4882. , DOI 10.1093/nar/25.24.4876
Vogel, H.J., Bonner, B.N., Acetyl-ornithinase of Escherichia coli: Partial purification and some properties (1956) J Biol Chem, 218, pp. 97-106. , 13278318
ISSN:03438651
DOI:10.1007/s00284-009-9469-9