Prediction of aquaporin function by integrating evolutionary and functional analyses
Aquaporins (AQPs) are a family of channel proteins, which transport water and/or small solutes across cell membranes. AQPs are present in Bacteria, Eukarya, and Archaea. The classical AQP evolution paradigm explains the inconsistent phylogenetic trees by multiple transfer events and emphasizes that...
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paper:paper_00222631_v247_n2_p107_PerezDiGiorgio2023-06-08T14:48:39Z Prediction of aquaporin function by integrating evolutionary and functional analyses Soto, Gabriela Cynthia Muschietti, Jorge P. Ayub, Nicolás Daniel Aquaporin Evolution Function Integration aquaporin cell membrane transport eukaryotic cell evolution nonhuman phylogeny prediction protein family review solute water transport Animalia Eukaryota Animals Aquaporins Bacteria Biological Transport Eukaryota Evolution, Molecular Humans Multigene Family Phylogeny Plants Protein Conformation Protein Interaction Domains and Motifs Aquaporins (AQPs) are a family of channel proteins, which transport water and/or small solutes across cell membranes. AQPs are present in Bacteria, Eukarya, and Archaea. The classical AQP evolution paradigm explains the inconsistent phylogenetic trees by multiple transfer events and emphasizes that the assignment of orthologous AQPs is not possible, making it difficult to integrate functional information. Recently, a novel phylogenetic framework of eukaryotic AQP evolution showed congruence between eukaryotic AQPs and organismal trees identifying 32 orthologous clusters in plants and animals (Soto et al. Gene 503:165-176, 2012). In this article, we discuss in depth the methodological strength, the ability to predict functionality and the AQP community perception about the different paradigms of AQP evolution. Moreover, we show an updated review of AQPs transport functions in association with phylogenetic analyses. Finally, we discuss the possible effect of AQP data integration in the understanding of water and solute transport in eukaryotic cells. © 2013 Springer Science+Business Media. Fil:Soto, G. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Muschietti, J.P. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Ayub, N.D. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. 2014 https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00222631_v247_n2_p107_PerezDiGiorgio http://hdl.handle.net/20.500.12110/paper_00222631_v247_n2_p107_PerezDiGiorgio |
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Universidad de Buenos Aires |
institution_str |
I-28 |
repository_str |
R-134 |
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Biblioteca Digital - Facultad de Ciencias Exactas y Naturales (UBA) |
topic |
Aquaporin Evolution Function Integration aquaporin cell membrane transport eukaryotic cell evolution nonhuman phylogeny prediction protein family review solute water transport Animalia Eukaryota Animals Aquaporins Bacteria Biological Transport Eukaryota Evolution, Molecular Humans Multigene Family Phylogeny Plants Protein Conformation Protein Interaction Domains and Motifs |
spellingShingle |
Aquaporin Evolution Function Integration aquaporin cell membrane transport eukaryotic cell evolution nonhuman phylogeny prediction protein family review solute water transport Animalia Eukaryota Animals Aquaporins Bacteria Biological Transport Eukaryota Evolution, Molecular Humans Multigene Family Phylogeny Plants Protein Conformation Protein Interaction Domains and Motifs Soto, Gabriela Cynthia Muschietti, Jorge P. Ayub, Nicolás Daniel Prediction of aquaporin function by integrating evolutionary and functional analyses |
topic_facet |
Aquaporin Evolution Function Integration aquaporin cell membrane transport eukaryotic cell evolution nonhuman phylogeny prediction protein family review solute water transport Animalia Eukaryota Animals Aquaporins Bacteria Biological Transport Eukaryota Evolution, Molecular Humans Multigene Family Phylogeny Plants Protein Conformation Protein Interaction Domains and Motifs |
description |
Aquaporins (AQPs) are a family of channel proteins, which transport water and/or small solutes across cell membranes. AQPs are present in Bacteria, Eukarya, and Archaea. The classical AQP evolution paradigm explains the inconsistent phylogenetic trees by multiple transfer events and emphasizes that the assignment of orthologous AQPs is not possible, making it difficult to integrate functional information. Recently, a novel phylogenetic framework of eukaryotic AQP evolution showed congruence between eukaryotic AQPs and organismal trees identifying 32 orthologous clusters in plants and animals (Soto et al. Gene 503:165-176, 2012). In this article, we discuss in depth the methodological strength, the ability to predict functionality and the AQP community perception about the different paradigms of AQP evolution. Moreover, we show an updated review of AQPs transport functions in association with phylogenetic analyses. Finally, we discuss the possible effect of AQP data integration in the understanding of water and solute transport in eukaryotic cells. © 2013 Springer Science+Business Media. |
author |
Soto, Gabriela Cynthia Muschietti, Jorge P. Ayub, Nicolás Daniel |
author_facet |
Soto, Gabriela Cynthia Muschietti, Jorge P. Ayub, Nicolás Daniel |
author_sort |
Soto, Gabriela Cynthia |
title |
Prediction of aquaporin function by integrating evolutionary and functional analyses |
title_short |
Prediction of aquaporin function by integrating evolutionary and functional analyses |
title_full |
Prediction of aquaporin function by integrating evolutionary and functional analyses |
title_fullStr |
Prediction of aquaporin function by integrating evolutionary and functional analyses |
title_full_unstemmed |
Prediction of aquaporin function by integrating evolutionary and functional analyses |
title_sort |
prediction of aquaporin function by integrating evolutionary and functional analyses |
publishDate |
2014 |
url |
https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00222631_v247_n2_p107_PerezDiGiorgio http://hdl.handle.net/20.500.12110/paper_00222631_v247_n2_p107_PerezDiGiorgio |
work_keys_str_mv |
AT sotogabrielacynthia predictionofaquaporinfunctionbyintegratingevolutionaryandfunctionalanalyses AT muschiettijorgep predictionofaquaporinfunctionbyintegratingevolutionaryandfunctionalanalyses AT ayubnicolasdaniel predictionofaquaporinfunctionbyintegratingevolutionaryandfunctionalanalyses |
_version_ |
1768542537793929216 |